Plant MITE

SE3550158

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6376
Mimulus guttatus
SE3550158
PIF/harbinger
To1
scaffold_8:22833627-22833906
TAA
AGGTGGTGTTTGCAAAAGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TA                     --------------------------------TTACA           --------------   - TTTTTTTGGCTCATAATCTATTTTTAAGTGTTTGCAAAATGAAATTTTGCTTTTACTTATCTTAAAATAAGCA
  AGGTGGTGTTTGCAAAAGCTT                                     AATAGATTATG              AGC T                                                                         
  |||||||||||||||||||||                                     |||||||||||              ||| |                                                                         A
  TCCACCACAAACGTTTTCGAA                                     AAATTCACAAA              TCC A                                                                         
AA                     TAAATTTTCATCTTCAATACCACAATCAATTAAACTA           TAAAGATTTTCAAT   C TGTTAAATGACCTTTTATTTGAATTTATCTTTTTTATTCCAGTACACACGCGAATTATTTAATATCGGATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550158

TAAGGTGGTGTTTGCAAAAGCTTTTACAAATAGATTATGAGCTTTTTTTTGGCTCATAATCTATTTTTAAGTGTTTGCAAAATGAAATTTTGCTTTTACTTATCTTAAAATAAGCAATTTTAGGCTATAATTTATTAAGCGCACACATGACCTTATTTTTTCTATTTAAGTTTATTTTCCAGTAAATTGTACCCTTAACTTTTAGAAATAAACACTTAAAATCAAATTAACTAACACCATAACTTCTACTTTTAAATAAGCTTTTGCAAACACCACCTAA

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