SE3550159

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6377
  • Mimulus guttatus
  • SE3550159
  • PIF/harbinger
  • To1
  • scaffold_12:24749742-24750025
  • TAA
  • AGGTGGTGTTTGCAAATGCTTTTTGAAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  -CTT         ---------------------------------------       C --------- TTTTTTTTTCTCATAATCTGTTTTTAGGTGTTTGCAAAATCAACTTTTGCTTTTGCTTCTCTTAAAATAATCTGCT
  AGGTGGTGTTTGCAAATG    TTTGAAAGT                                       GATTATG G         G                                                                            
  ||||||||||||||||||    |||||||||                                       ||||||| |         |                                                                             
  TCCACCACAAACGTTTAC    AAATTTTCG                                       ATAAAAA T         C                                                                            
AA                  TAAT         TCTTAAATCACTAACACTAAATTCAATCAAAATTCACGA       - TTTCAACCC CACAAACGTTTATAAAGCCTTTTACTTGATTTTAACTTTTTCGTCCCAATCCCCACGAAAATTTTTTTATCGAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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