SE3520162

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6380
  • Mimulus guttatus
  • SE3520162
  • Mutator
  • M19
  • scaffold_8:14534307-14534959
  • ATTAATAAA
  • GGCTTAATCCCACTTTGCACCGTTAAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
ATTAATAAAC      ATC        CAC G  A    ATATCA                   C    CAAAT    A       G    A             T     G          CCTATATGAGTTT    --A           -       --        A      TTTAAAAATTATATTTTTTTATCACAAAAAAATATTTTACGAAAAAAAAAAAAAATCCTTCAGCTATTCCGTTATCAAGTTATTTGAAAATCATATTTTCTTCCAAATATTTGTACTTAATATTTCAACCAATTACAATTAAAGATCTATCAATCA
          GGCTTA   CCACTTTG   C TT AAAT      TTTTGGCACTTTGCACTCT GAAA     TAAT GCACTTT TACC TCGAAACACAATA ATCAT CATAATGCAC             TTAA   GATAATAAAGG TAATTTA  ATATTTTT GTGGTA                                                                                                                                                            
          ||||||   ||||||||   | || ||||      ||||||||||||||||||| ||||     |||| ||||||| |||| ||||||||||||| ||||| ||||||||||             ||||   ||||||||||| |||||||  |||||||| ||||||                                                                                                                                                            A
          CCGAAT   GGTGAAAC   G AA TTTA      AAAATTGTGAAACGTGGGA CTTT     ATTA TGTGAAA GTGG AGTTTTGTGTTAT TAGTA GTGTTACGTG             AATT   TTATTATTTCC ATTAAGT  TAAATAAC ATAAAA                                                                                                                                                            
CAAATAATTA      CAA        ATA G  C    CCTTAA                   A    TTATT    A       A    G             T     A          -----------AT    AAC           T       AA        A      AAGACCAAGTTTTATCGTTAATTTAATAATAAAAGAAGTTGGAGGTTGGATTAAAGCTCGCGTGATTCACGCTTTTTTATTTTTAGTGTGGCCTATTAACTTTTTTTTATATAAAAGAATGTTTTATTTTAGTTTATTGAAAATAGTGATTTAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End