SE3540163

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6381
  • Mimulus guttatus
  • SE3540163
  • CACTA
  • Ca1
  • scaffold_6:18633619-18633912
  • GCT
  • GCTCACTAGTAGAAAATTTGCTTATTACTACGA

Secondary structure and sequence

TSD    TIR
5'



3' 
   T             TTT    A         AT    -    TACAGTAAAAAACCGTTATAAAAGGTATTTTTTACTACGGAACAATTTTGAAGTTGTAGTAAATACTAGGATTTACCGTAGCAAAAAAGTATTTGGTACGGTCA
 GC CACTAGTAGAAAA   GCTT TTACTACGA  TTTT TTGC                                                                                                        
 || |||||||||||||   |||| |||||||||  |||| ||||                                                                                                         
 CG GTGATCATCTTTT   CGAA AATGATGCT  GTAA TGGC                                                                                                        
T  -             TAC    A         -A    T    ATCGTTTTCCATAGTTTAAGCATGATTTTTCGAAAAACGATGCGTAAACGATGCTTAAACGGGGCATCGTATATGCCCGCACTGTTTTCGAAACGATGCCATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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