SE3550164

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6382
  • Mimulus guttatus
  • SE3550164
  • PIF/harbinger
  • To2
  • scaffold_12:1006730-1006932
  • TAA
  • AGGCCTCGTTTGGTTGCCGAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                CC     AAGAT      A   AAAATCAA   -  C  -  GAAATCCAATTATATTATTCGACCTTCGATGATGATAACAAAATTTTT
  AGGCCTCGTTTGGTTG  GAGAT     TAGTCA GAT        ATA AT TA AT                                                
  ||||||||||||||||  |||||     |||||| |||        ||| || || ||                                                G
  TCCGGAGCAAACCAAC  CTCTA     ATCGGT CTA        TTG TT AT AT                                                
AA                CC     -----      A   -------A   A  T  T  CCTGAAACAAACTACAAACCATAGGGTTATTGAACAGCCCAGCTGGGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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