SE3520165

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6383
  • Mimulus guttatus
  • SE3520165
  • Mutator
  • M1
  • scaffold_14:19251856-19252109
  • CCAATTTAT
  • GGAGTTTATTGCAGTTGGTACCCTATGTTATATCGAATTGCTAAAAAGATACCCCATGTTATTTTATTGGCAAAAAAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
CCAATTTAT  A                     -A            T  C         -                         AAA  ATTA           -   TTC    AGTTA        GT
         GG GTTTATTGCAGTTGGTACCCT  TGTTATATCGAA TG TAAAAAGAT ACCCCATGTTATTTTATTGGCAAAA   CC    TGATTTAATTT CTT   TAGC     GCACCCCT  
         || |||||||||||||||||||||  |||||||||||| || ||||||||| |||||||||||||||||||||||||   ||    ||||||||||| |||   ||||     ||||||||  C
         CC CAAATAACGTTAATCATGGGG  ACAATATAGCTT AC ATTTTTCTG TGGGGTACAATAAAATAACCGTTTT   GG    ACTAAGTTAAA GAA   ATCG     TGTGGGGA  
GTATTTAAC  C                     AC            C  C         A                         AGG  GGAC           A   ---    -----        AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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