Plant MITE

SE3520166

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6384
Mimulus guttatus
SE3520166
Mutator
M26
scaffold_6:6290025-6290288
ATTTGTTTG
GGGAGCGGCTAAAACAAATACCGTTTCTTTCTTACTTCAATACCACCAACATAAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

ATTTGTTTG              C                                A          TAAGAAAT                G            T              A         CA  CAA
         GGGAGCGGCTAAAA AAATACCGTTTCTTTCTTACTTCAATACCACC ACATAAAAAA        AAATAGATAATAAATA GTAATGACATTA TACTCTTAATGAAA TCAATACCA  CA   
         |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||        |||||||||||||||| |||||||||||| |||||||||||||| |||||||||  ||   A
         CCCTCGCCGATTTT TTTATGGCAAAGAAAGAGTGAAGTTATGGTGG TGTATTTTTT        TTTATCTATTATTTAT CATTACTGTAAT ATGGGAATTATTTT AGTTGTGGT  GT   
GTTTATTTA              A                                C          --------                A            T              -         AG  TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520166

ATTTGTTTGGGGAGCGGCTAAAACAAATACCGTTTCTTTCTTACTTCAATACCACCAACATAAAAAATAAGAAATAAATAGATAATAAATAGGTAATGACATTATTACTCTTAATGAAAATCAATACCACACACAAAATTTGGATGGTGTTGATTTTATTAAGGGTATTAATGTCATTACATATTTATTATCTATTTTTTTTTATGTCGGTGGTATTGAAGTGAGAAAGAAACGGTATTTATTTTAGCCGCTCCCATTTATTTG

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