SE3520167

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6385
  • Mimulus guttatus
  • SE3520167
  • Mutator
  • M19
  • scaffold_3:17259756-17260186
  • CCAAAAGAA
  • GGCTTAATTTCACTTTGCACCCTTCAAATGTACCATTTTGGCACTTTGCACCTCAAAAATAATTTATGGCACTTTGCACCCTCGAAACATGTTTAATCGTTCAAATGACATCCAAGTTTATTTTCCGTCCTGAATTTCCATTGTTGACATATTTTCTGATTGTCAACAAAGTCATTTTCGCT

Secondary structure and sequence

TSD    TIR
5'



3'
CCAAAAGAA                               AC               C     AA   -    TT      C        C                C       -  A     A   T      C  T  -   A    CA        A                   AA        C -  CGAA   AC   AGTA    GCA
         GGCTTAATTTCACTTTGCACCCTTCAAATGT  CATTTTGGCACTTTG ACCTC  AAA TAAT  ATGGCA TTTGCACC TCGAAACATGTTTAAT GTTCAAA TG CATCC AGT TATTTT CG CC TGA TTTC  TTGTTGAC TATTTTCTGATTGTCAACA  GTCATTTT G CT    AAT  ATT    CTTT   
         |||||||||||||||||||||||||||||||  ||||||||||||||| |||||  ||| ||||  |||||| |||||||| |||||||||||||||| ||||||| || ||||| ||| |||||| || || ||| ||||  |||||||| |||||||||||||||||||  |||||||| | ||    |||  |||    ||||   C
         CCGAATTAAAGTGAAACGTGGGAAGTTTACG  GTAAAATCGTGAAAC TGGGG  TTT ATTA  TATCGT AAGCGTGG AGTTTTGTACAAATTA TAAGTTT AC GTGGG TCA ATAAAA GT GG ATT AAAG  AGCAGCTG ATAAAAGGCTAGCAGTTGT  CAGTAAAA C GA    TTA  TAA    GAAG   
AAGAAAACC                               CA               T     GA   C    TT      A        -                A       C  -     A   T      A  T  T   A    AC        A                   AC        A A  TAAG   AC   AAAA    TCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End