SE3520168

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6386
  • Mimulus guttatus
  • SE3520168
  • Mutator
  • M4
  • scaffold_13:5638366-5638906
  • TATATAAAA
  • TATATAAAAGGGTAAATTCCACTTTCCCACCTTGTACTTTGGCTTGATATCATTTTACCCCATTCTACAATCAATTGCATCCATTTGTCCCCCTGTACTTGAAAAATTGCCTCAATGTGGTCCTCGTCGTTAGTTTTCAAACATTTTTCCTTAACACAGTTTGATCTAATTCTGAAAATTACAAAAAAGTCACTCCTCCCAGTTTAAATAATTATTAAAAAGTAAAAAAAGAAAAAACAA

Secondary structure and sequence

TSD    TIR
5'



3'
        AAA                  CCA       C         A   C          A      AA  A        C    G     C       G        C  C           C  C       T   A      TT         A           -        A         A  C   C   C                               GA        -TTGT   --     ---------   T    T   TTT
   TATAT   AGGGTAAATTCCACTTTC   CCTTGTA TTTGGCTTG TAT ATTTTACCCC TTCTAC  TC ATTGCATC ATTT TCCCC TGTACTT AAAAATTG CT AATGTGGTCCT GT GTTAGTT TCA ACATTT  CCTTAACAC GTTTGATCTAA TTCTGAAA TTACAAAAA GT ACT CTC CAGTTTAAATAATTATTAAAAAGTAAAAAAA  AAAAACAA     GAT  AGGCG         TCA GGAC ATG   
   |||||   ||||||||||||||||||   ||||||| ||||||||| ||| |||||||||| ||||||  || |||||||| |||| ||||| ||||||| |||||||| || ||||||||||| || ||||||| ||| ||||||  ||||||||| ||||||||||| |||||||| ||||||||| || ||| ||| |||||||||||||||||||||||||||||||  ||||||||     |||  |||||         ||| |||| |||    
   ATATA   TCCCATTTAAGGTGAAGG   GGGACAT AAACCGAGC ATA TAAAATGGGG AAGATG  AG TAACGTAG TAAA AGGGG ACGTGAA TTTTTAAC GA TTACACCGGGA CA CAATCAA AGT TGTAAA  GGAATTGTG CAAACTGGATT GAGACTTT AATGTTTTT CG TGG GAG GTCAAATTTATTAATAATTTTTTGTTTTTTT  TTTTTGTT     TTG  TTTGT         AGT TCTG TGC   
AAA     ---                  --A       A         C   T          G      AG  C        T    -     T       A        A  A           A  A       C   C      TT         G           C        -         G  T   A   A                               -G        TTTTT   GT     TATTTTTTA   -    T   TCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End