Plant MITE

SE3510169

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6387
Mimulus guttatus
SE3510169
Tc1/Mariner
St3
scaffold_9:13811776-13812052
TA
TACTCCCTCCGTTTCAAATTAACTGTCGCTTTGGG

Secondary structure and sequence

TSD TIR

5'

3'

            T        A      C      ----   TT  TCT -  T   AATTA CTGTCACTTTAGAATTTCAATGATGCATTAATTACTATTTTCTCAATTTTACCCTTATTACTATTCATTAATTGATTGAAAAT
TACTCCCTCCGT TCAAATTA CTGTCG TTTGGG    GGT  TT   T GT TCA     T                                                                                   
|||||||||||| |||||||| |||||| ||||||    |||  ||   | || |||     |                                                                                    
ATGAGGGAGGTA GGTTTAAT GACAGC AAACCC    ACG  GT   G AT AAT     T                                                                                   
            C        A      A      AACA   -C  --- T  -   ----- CTTTTAATTATTTATACGTAGCTAAAATCTCTTTTCATATATCTTACTGATTTTATAGGTATAATAATTACAACAAAGGTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510169

TACTCCCTCCGTTTCAAATTAACTGTCGCTTTGGGGGTTTTTTCTTGTTTCAAATTATCTGTCACTTTAGAATTTCAATGATGCATTAATTACTATTTTCTCAATTTTACCCTTATTACTATTCATTAATTGATTGAAAATTAATGGAAACAACATTAATAATATGGATATTTTAGTCATTCTATATACTTTTCTCTAAAATCGATGCATATTTATTAATTTTCTTAATATGTGCGCAACAACCCAAAACGACAGATAATTTGGCATGGAGGGAGTA

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