SE3550170

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6388
  • Mimulus guttatus
  • SE3550170
  • PIF/harbinger
  • To1
  • scaffold_3:12033764-12034047
  • TAA
  • AGGTGGTGTTTGCAAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  ATTATTTAAA   AGAAGTTAGTGATTGTGATTTAAGTTAGTTTTAAGTGCTTATTTCTAAAAGTTGGGGGTGTTTGCAAATATTTCGGAAAATGAACTAAAATTGAAAAAGCAGGGTTATG
  AGGTGGTGTTTGCAAATG          AGC                                                                                                             
  ||||||||||||||||||          |||                                                                                                             G
  TCCACCACAAACGTTTAC          TCA                                                                                                             
AA                  -GAAAAACTT   CTAATACGCCAAAAAAAACGAGTATTAGACAAAAATCCACAAACGTTTTAGTTGAAAACGAAAACGAAGAGAATTTTATTAGACGAAATTCGATAAAAAAATTTTCGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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