Plant MITE

SE3530171

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6389
Mimulus guttatus
SE3530171
hAT
Hat14
scaffold_5:3844224-3844908
GTAATAAT
ATTAGGGATGGC

Secondary structure and sequence

TSD TIR

5'

3'

GTAATA            ----CAT        - ATC  AATCCCCGCACCCGCCCCGTTTAGAAAATCAAGCAACCCGCACCCGCCCCATACCCGTTGCGGGTTGGAATTTTAGAACCCGCCCCCGACCCATTTTGCACCCGCGGGTACCCGCCCCGTTTGACGACCCGTTTTTCCTTTTCTCTTCCATTTAAACTTTTCCTTCTTGAATATAAAAATCAATTCTAGTTATCTTCCTTTAAAAAAAAAAAGTTTTTTTTTTCCAATATATATATATATATATATATATACTAATTACTAAATACAATTAAAATATAAATGCAAATCAACAATCATTTTATAAAA
      ATTAGGGATGGC       GGGGCGGG T   GC                                                                                                                                                                                                                                                                                                                  
      ||||||||||||       |||||||| |   ||                                                                                                                                                                                                                                                                                                                  T
      TGATCCCTACCG       GGGCTGGG C   GC                                                                                                                                                                                                                                                                                                                  
TAATAA            TTATAAT        C ---  CCATGGGCGGGGCGGGGCGGGGTAAAATCTGCCCATTATGGGCGGGGCAAATCCTAACCCCGCCCATTCCCAAAATGTTAAATATGGACGTTGCCCATTCCCCGCCCATGCCCATATCATTTTAAAGGGGGCATGGGCTGGGCAAATAGTGGGCATAAAAAATAAATGCATATTATGGGAACATATATAATAAAAAGATAAATAAAAGAAAAATAAATAAAACATAATTCATAACAGCTTGTATCCACTGACCCACCGAACAATTTTCTATTGCTACAAACGAAAATTAAAGACTACATTATACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530171

GTAATAATTAGGGATGGCCATGGGGCGGGTATCGCAATCCCCGCACCCGCCCCGTTTAGAAAATCAAGCAACCCGCACCCGCCCCATACCCGTTGCGGGTTGGAATTTTAGAACCCGCCCCCGACCCATTTTGCACCCGCGGGTACCCGCCCCGTTTGACGACCCGTTTTTCCTTTTCTCTTCCATTTAAACTTTTCCTTCTTGAATATAAAAATCAATTCTAGTTATCTTCCTTTAAAAAAAAAAAGTTTTTTTTTTCCAATATATATATATATATATATATATACTAATTACTAAATACAATTAAAATATAAATGCAAATCAACAATCATTTTATAAAATAACATATTACATCAGAAATTAAAAGCAAACATCGTTATCTTTTAACAAGCCACCCAGTCACCTATGTTCGACAATACTTAATACAAAATAAATAAAAAGAAAATAAATAGAAAAATAATATATACAAGGGTATTATACGTAAATAAAAAATACGGGTGATAAACGGGTCGGGTACGGGGGAAATTTTACTATACCCGTACCCGCCCCTTACCCGTTGCAGGTATAAATTGTAAAACCCTTACCCGCCCCAATCCTAAACGGGGCGGGTATTACCCGTCTAAAATGGGGCGGGGCGGGGCGGGTACCCGCCGGGTCGGGTAATATTGCCATCCCTAGTAATAAT

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