SE3520172

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6390
  • Mimulus guttatus
  • SE3520172
  • Mutator
  • M2
  • scaffold_11:3137936-3138402
  • TTGATTTAT
  • TGATTTATAGGGTAAATTACAGCCACACTGAGGTAATGTCAAATTACGAAAAAATCCCTCATATTTGGGTAATTACAACCACCCCTTTAACTATGAATCTTCGTACACGTCCACCCTTATGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
 T   T   T            A     -A         T   A            A        A                    -                   G               A            CAACAT       -AA   CC                               -----    AAAATGCAGTTTCTGATGCACCACAATCTGATATTTACAAGCC
  TGA TTA AGGGTAAATTAC GCCAC  CTGAGGTAA GTC AATTACGAAAAA TCCCTCAT TTTGGGTAATTACAACCACC CCTTTAACTATGAATCTTC TACACGTCCACCCTT TGGTGTCAAATT      AATCTTT   ATT  GTGGAATGTTCTCTAGTTTGTACTCGTTTTG     TGCA                                           
  ||| ||| |||||||||||| |||||  ||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||      |||||||   |||  |||||||||||||||||||||||||||||||     ||||                                            
  ATT AGT TCCCATTTAATG CGGTG  GACTCCATT CAG TTAATGCTTTTT AGGGAGTA AAACCCATTAATGTTGGTGG GGGAGTTGATACTTAGAAG ATGTGTAGGTGGGAA GCCACAGTTTAA      TTAGAAG   TAA  CACCTTATAAGAGGTCAAACATGGGCAAAAT     AAGC                                           
AT   T   -            C     GG         C   C            -        C                    T                   A               C            ATCACC       ATC   TA                               GGGGT    TCGAGGTGTAAAACTTTGTTCTACTAGTATTCTACAGAGATAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End