SE3550173

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6391
  • Mimulus guttatus
  • SE3550173
  • PIF/harbinger
  • To8
  • scaffold_12:21417808-21418152
  • TAA
  • AGAGGGTGTTTCGCTAAGCTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA           C           -------------TTTA       GATAAGCTCTTACGTCTGATAAGATGTTTTAGGAGCTGATAAGCTGTTACATCTTATTTTTAGGATTAATTTTTAGAGTGTTTGGATAATAAACTTATTTTCTATTTTTACTCATTATAAGATCTTAAAT
  AGAGGGTGTTT GCTAAGCTTAT                 AACAGCT                                                                                                                                  
  ||||||||||| |||||||||||                 |||||||                                                                                                                                   
  TCTCCCACAAA CGATTCGAATA                 AATATTC                                                                                                                                  
AA           C           TTCTACAATTTTCCTCA       TACAAAATCTCGAATATTCAGAAAGTTTCACAAACCATTAAAAAAAATTTTTCTAGAATTAAAAAAATTTTTATTCAACAACCTCTCGTTTATTCTAGAAAAATTTATTCATGGAGATGGGGTGTAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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