SE3520174

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6392
  • Mimulus guttatus
  • SE3520174
  • Mutator
  • M18
  • scaffold_12:6393721-6394135
  • TTAATTTTA
  • TAATTTTAGGGAAAATTGCAC

Secondary structure and sequence

TSD    TIR
5'



3'
T   TT       -   T     ATCA   C            AA    C       A           TT        -  A    -      C           TC   -      A   C     AT   -------AA    ---  -    ----  TTATTCATCGGAATTGAGGATTTTTTTTGCACGTTACCCCTTTAAATGTTATTTTTA
 TAA  TTAGGGA AAA TGCAC    CCC CTATAAATTTCT  TTTT GCACTTT CCCCCTCAAAA  TTGAAAAG TG ATGT CCCCCT CAAAATATTAT  TTG TTGCAC TTT CCCCG  AGC         AATT   CC GATG    GA                                                         
 |||  ||||||| ||| |||||    ||| ||||||||||||  |||| ||||||| |||||||||||  |||||||| || |||| |||||| |||||||||||  ||| |||||| ||| |||||  |||         ||||   || ||||    ||                                                         T
 ATT  AATTCCT TTT ACGTG    GGG GATATTTAAAGA  AAAA TGTGAAA GGGGGGGTTTT  AATTTTTC AC TATA GGGGGA GTTTTATAATA  AAC AACGTG AAA GGGGT  TCG         CTCC   AA ACGT    TT                                                         
    TT       G   T     AAAC   A            CA    T       -           -T        T  C    A      A           -T   T      -   C     AT   GTTAAACAC    CGT  C    TGTT  TATTATAAAATTTCCCCGTTACACGTTTTTTCATTACAAAAATTCCCCGTTGAACGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End