SE3520175

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6393
  • Mimulus guttatus
  • SE3520175
  • Mutator
  • M8
  • scaffold_10:17099405-17099846
  • TACTAATAT
  • TAGGGTAAATTACGACCAACCCTGAGGTAAGGTCAAATTACGAAAAAATCCCTCATGTTCGGATAATTGCAACCACCCCTTAACTATGAATCTTCTTACACGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTAATA              A   A    -          C                    AT   C            C          C                   CCACC  T      -A              TCTCTAGTTTGTATTCGTTTTGTGCAAAAATGCAGTTATACACCACAATCTGATATTTACAAGCCAAGAGACACATCTTATGA
        TAGGGTAAATTACG CCA CCCT GAGGTAAGGT AAATTACGAAAAAATCCCTC  GTT GGATAATTGCAA CACCCCTTAA TATGAATCTTCTTACACGT     TC ACCCTT  TGGTGTCAGAATGT                                                                                   
        |||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||  ||| |||||||||||| |||||||||| |||||||||||||||||||     || ||||||  ||||||||||||||                                                                                    
        ATCCCATTTAATGC GGT GGGA CTCCATTCCA TTTAATGCTTTTTTAGGGAG  CAA CCTATTAATGTT GTGGGGAGTT ATACTTAGAAGAATGTGCA     AG TGGGAA  GCCACAGTTAAATC                                                                                   
ATATAATC              C   G    A          A                    GC   A            A          A                   -----  -      AC              ACTTTAGAAGATTTAATACACCTTATAAGAGGTTAAACATGGGCAAAATGGGGTAAGCTCGAGGTGTAAAATTTTGTTCTACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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