Plant MITE

SE3520176

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6394
Mimulus guttatus
SE3520176
Mutator
M24
scaffold_9:12522783-12523138
AAATTAAAA
GGGTAAATAGCACTTAACCCCCTGTGGTTTGAGGTTTGTGCACATGACTCCCTTGTACTTTTAATATA

Secondary structure and sequence

TSD TIR

5'

3'

AAATTAAAA                 C     -          G             C      G  C          AGCACAT      TTTCAATATAAGCACATGACTCCCTGTAGTTTGAATTTTGTGCACATGACCTCCTTGTACTTTTAATATAAGCACATAACCCCCTATGGTA
         GGGTAAATAGCACTTAA CCCCT GTGGTTTGAG TTTGTGCACATGA TCCCTT TA TTTTAATATA       GACTAC                                                                                           
         ||||||||||||||||| ||||| |||||||||| ||||||||||||| |||||| || ||||||||||       ||||||                                                                                            
         CCCATTTATCGTGAATT GGGGA CACCAAATTT AAACACGTGTACT GGGGAG AT AAAGTTATAT       CGTGTA                                                                                           
AAAATTAAA                 C     G          G             C      A  A          -------      CTGGGGGAACATAAAATTATATTAGTTTATTGAGGGAACATGAAAGTTTTGAAAGGAAAAGGATTACTCGTTCTAATAAATAGTTCACCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520176

AAATTAAAAGGGTAAATAGCACTTAACCCCCTGTGGTTTGAGGTTTGTGCACATGACTCCCTTGTACTTTTAATATAAGCACATGACTACTTTCAATATAAGCACATGACTCCCTGTAGTTTGAATTTTGTGCACATGACCTCCTTGTACTTTTAATATAAGCACATAACCCCCTATGGTATTCCACTTGATAAATAATCTTGCTCATTAGGAAAAGGAAAGTTTTGAAAGTACAAGGGAGTTATTTGATTATATTAAAATACAAGGGGGTCATGTGCTATATTGAAAATAAGAGGGGCTCATGTGCACAAAGTTTAAACCACGAGGGGCTTAAGTGCTATTTACCCAAATTAAAA

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