SE3550177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6395
  • Mimulus guttatus
  • SE3550177
  • PIF/harbinger
  • To2
  • scaffold_14:308598-308837
  • TTA
  • AGGCCTCGTTTGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                CCAAGATA          A   AA            -------TAATGAAAC    TTATATTATTGAACCTTGGAAGATAAAAAAAAAACATGCCTAAAAAGCAAGA
  AGGCCTCGTTTGGTTG        AGATTAGCCA GAT  AATTAAATAATG                CCAA                                                    
  ||||||||||||||||        |||||||||| |||  ||||||||||||                ||||                                                    T
  TCCGGAGCAAACCAAC        TCTAATCGGT CTA  TTGATTTATTAC                AACC                                                    
AT                -----CCC          A   -A            CCTGAAACAAACTACA    ATAGGGGTTATTGAACGGCCTAGCTGGGCGTTTATAATACAATAGTGCGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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