SE3530178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6396
  • Mimulus guttatus
  • SE3530178
  • hAT
  • Hat15
  • scaffold_8:20991919-20992465
  • ATTACCAT
  • ATCTATGGTGCACGGACAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTACC       G           ---G     G -  ACACGGCGATACGCGGATACGGACACGGTGATACGGCATTTCCAAAAAACTAGGATACGGACACGTGGGGGATACGCGTAAATATAAAAATATAGGGGTATATTTATAAATAATAAAAATATAGGGGTACATTTATAAATTGTAAAAAATATGTATAAGTCGTCATCGCATAAGAGAACCACTCGCCCTTGTTGCTCGTGTTCTTGATCGCCGTCGCATGCTAGACTTTTAGAGTTT
      ATCTATG TGCACGGACAC    GATAC T GG                                                                                                                                                                                                                                             
      ||||||| |||||||||||    ||||| | ||                                                                                                                                                                                                                                              
      TAGATAC ACGTGCCTGTG    TCTTC C CT                                                                                                                                                                                                                                             
TACCAT       G           AAGA     - A  TCTCAGGGGCATAGGCTATGGACCTGTGAGCCTATGAGAGCCTGTGAAGAGCCTGTGGGCACAGCCCGGCACAGCATTAAAGCGATTTTCATCCTGTGGGCATAGCCCGTCACAGGTGTTAAAATTTTTTCAACCCTGTGAAGAGAATGCAACATTTCCTCTCGAGATTATTTTTTTTACGCGTAAAAGAAAAGAAACATTATGTGTAAAGGAGACAAAAGAAACACTCAGGTGGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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