SE3520181

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6399
  • Mimulus guttatus
  • SE3520181
  • Mutator
  • M25
  • scaffold_8:9025999-9026466
  • TTACTAATA
  • TAGGGGCATGCTAAATCCCACACTAAAATTTACTAAATCCCACACATAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TTACTAA   GG  ----                   AA           CC          TAAAAAAAAAATA        ----     --A        --AA         ---A G     T     -    -T   T  --   TT    ---AATC     --C    ATAATCATAAAAAGTGAGTTTAGGTTTATTTAATATTTTTCAATTTCATTATGCCTCTTTAATTATTTAAAT
       TAG  GC    ATGCTAAATCCCACACTAA  TTTACTAAATC  ACACATAATT             TCTTTCTA    CTTAT   TTCTTTCT    CTTTTTTCT    T ATGAT TTTTC CAAG  CAC CA  AAA  CGTT       TTTCA   GTGA                                                                        
       |||  ||    |||||||||||||||||||  |||||||||||  ||||||||||             ||||||||    |||||   ||||||||    |||||||||    | ||||| ||||| ||||  ||| ||  |||  ||||       |||||   ||||                                                                        T
       ATC  TG    TACGATTTAGGGTGTGGTT  AAATGATTTAG  TGTGTGTTAA             AGAGAGAT    GAGTA   GAGGAAGG    GGAAGAAGA    G TATTG AAAAG GTTT  GTG GT  TTT  GCAG       AAGGT   AGTT                                                                        
    ATA   AT  ACTA                   -A           TA          CTTAAAAAGAGAG        TTTA     GAA        AGTG         AAAA G     T     T    TG   T  GA   TT    GTATAAT     TCA    AAAACTCTTTTTAGAAGTACACAAGTTTGATTTTACTTCAACCTTAAACTCTAAAAAAAAACTTAACTATAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End