SE3520182

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6400
  • Mimulus guttatus
  • SE3520182
  • Mutator
  • M3
  • scaffold_4:4399157-4399444
  • TTATAAGTA
  • TTATAAGTAGGGTAAATTACACCCACACCCCTGATGTATGCTAAAATAACTTTAAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
        AGT               C          T                 TAA   ----------CCCC   GTTTCGATAATTACACTTACCCCCTAAAACATAGTTAGAAACTCTAATGGGATAATGCATTGGATGCATTATTC
   TTATA   AGGGTAAATTACACC ACACCCCTGA GTATGCTAAAATAACTT   GGT              GTA                                                                          
   |||||   ||||||||||||||| |||||||||| |||||||||||||||||   |||              |||                                                                           
   AATAT   TCCCATTTAATGTGG TGTGGGGACT CATACGATTTTATTGAA   CCA              ACC                                                                          
ATG     ---               C          C                 TAC   TTAAATTCTTTACA   CTCTTGGTACAGTGGGGGATTGAGATACAATAGAGGTGGTGATCAATTTCATTATCATGCAATCTTGACATAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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