SE3520183

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6401
  • Mimulus guttatus
  • SE3520183
  • Mutator
  • M3
  • scaffold_7:3575103-3575544
  • ATATAATTA
  • TAATTAGGGTAAATTACACCTACATCCTGAGGTATGCTAAAATAACTTTAAGATCCTTGTGGTATTGTTAATTACAGCCACACCCCTGGAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA      ---                CA                          A A              T         C  CA           ATTAC  GA  CAA   -   AT    TGGGGACCGATATGCACTATATTCGTTTCCCGCAGGGCCGGAAATTGTACGATAGACGAAAATCTATAAATCTTATATAAAATAATAAGGATTTAAGAAATGT
   TAATTA   GGGTAAATTACACCTA  TCCTGAGGTATGCTAAAATAACTTTA G TCCTTGTGGTATTG TAATTACAG CA  CCCCTGGAATA     CG  GC   GAT TTC  GTCC                                                                                                       
   ||||||   ||||||||||||||||  |||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||  |||||||||||     ||  ||   ||| |||  ||||                                                                                                        
   ATTAAT   CCCATTTAATGTGGAT  GGGACTCCATACGATTTTATTGAAAT C AGGGACGTCATAAC ATTAATGTT GT  GGGGACTTTGT     CA  AT   CTT GGG  TTGC                                                                                                       
         ATA                AG                          C C              C         A  TG           ---AA  --  ---   T   -A    CTTATTTAGTAACCTTTTCAAAAAGTAAACCCCAAGATTGCCTGATAATCAAGGTCCGTCACCACCCCTGTTGTATCTCGATCCCCCACTGTACCGAGAGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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