SE3550186

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6404
  • Mimulus guttatus
  • SE3550186
  • PIF/harbinger
  • To18
  • scaffold_10:5172853-5173015
  • TAA
  • AGGCCTCGTTTGGTTCGTAAGATAAGATTCGTCAAGATAATATTAAATAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               C TA    A  AT    CAA   AA           ATAATGAAAACGCAAGAT   -- CCGGAATGTTTTTGGGT
  AGGCCTCGTTTGGTT G  AGAT AG  TCGT   GAT  TATTAAATAAT                  TAA  G                 
  ||||||||||||||| |  |||| ||  ||||   |||  |||||||||||                  |||  |                  
  TCCGGAGCAAACCAA C  TTTA TC  GGCA   CTA  GTAATTTATTA                  GGT  G                 
AA               C TC    A  --    ---   -A           -----------------A   GA ATAAACAACAAACCATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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