SE3520188

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6406
  • Mimulus guttatus
  • SE3520188
  • Mutator
  • M9
  • scaffold_5:17703840-17704144
  • GAACTTTAA
  • GGGGAAATTACAGTTTTCATCCATCAAGTCTGCATCGATTTCACATTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAACTTTAAA       T          A   ATC    C        T            CC   -    CACAAAAAACACATTTGGTCCCTCATGTTCCAATAATTTAACACTTTTGGTCATTACCGTCAATTTACCGTTACTCTGTTAG
          GGGGAAA TACAGTTTTC TCC   AAGT TGCATCGA TTCACATTTGGT  CCA TGTT                                                                                  
          ||||||| |||||||||| |||   |||| |||||||| ||||||||||||  ||| ||||                                                                                  T
          CCCTTTT ATGTCAAAAG AGG   TTCA ACGTGGCT AAGTGTAAACTA  GGA TATA                                                                                  
AAATTTTAAG       T          C   GAT    A        T            -C   A    AAGTTTTTAAGTTGTGAAAATCAGTAAAGGCAGTTAAAAGGTAATTTTGATTGCCTTAATTCGCACAAAGTACTGAAGGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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