SE3520190

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6408
  • Mimulus guttatus
  • SE3520190
  • Mutator
  • M8
  • scaffold_7:3755626-3756092
  • TAAAAATAA
  • AGGGTAAATTACAACCACCCCTGAGGTATGGTCAAATTACGAAAACCCCCCTCATGTTTGGGTAATTACAACCACCCATCAACTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAATA                     -              A         CC      A        T       A C    A        -AAATC                    C   TTC        TGG   TT  G     ATA      ATTA  ----A  TT     CCAATTTTATCCCATTCGAACTTCACATTTTAAAGCAAGATGTTCATAATATGTGTT
        AGGGTAAATTACAACCACCCC TGAGGTATGGTCAA TTACGAAAA  CCCCTC TGTTTGGG AATTACA C ACCC TCAACTAT      TTCTTACACGTCCGCCCTTG GGT   AAATTTAG   AAT  TC AGATT   TGGAAT    TC     CT  TGTAC                                                         
        ||||||||||||||||||||| |||||||||||||| |||||||||  |||||| |||||||| ||||||| | |||| ||||||||      |||||||||||||||||||| |||   ||||||||   |||  || |||||   ||||||    ||     ||  |||||                                                          
        TCCCATTTAATGTTGGTGGGG ACTCCATACCAGTT AATGCTTTT  GGGGAG ACAAACCT TTAATGT G TGGG AGTTGATA      AAGAATGTGCAGGTGGGAAT TTA   TTTAAGTT   TTG  AG TCTAA   ACCTTA    AG     AC  ATGAG                                                         
AATAAAAA                     G              A         TT      A        C       A A    G        CTAAAA                    A   CAT        GTA   -T  A     AGC      CACG  ATCAA  --     CAAAACACATTTTTATGTCAAAGACTACGTGGTGTTAGACTATATATGTTCGGTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End