SE3520191

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6409
  • Mimulus guttatus
  • SE3520191
  • Mutator
  • M14
  • scaffold_10:1755210-1755449
  • TTCAAATTT
  • GGGTAAATTACAACCACCTCCCTTAGTTAAAGTGTAATTACGAAAAAAACCCTATGTTTTATAAATTACGCTCAACCCCATAGTTTATAAATTTCTTACATCCACCC

Secondary structure and sequence

TSD    TIR
5'



3'
TTCAAATTT             C    TC   T  T   A  G  ATT      AA      --ATG          T       A    --A      A  A     T   ATC     CCTT
         GGGTAAATTACAA CACC  CCT AG TAA GT TA   ACGAAA  AACCCT     TTTTATAAAT ACGCTCA CCCC   TAGTTT TA ATTTC TAC   CACCC    
         ||||||||||||| ||||  ||| || ||| || ||   ||||||  ||||||     |||||||||| ||||||| ||||   |||||| || ||||| |||   |||||    T
         CCCATTTAATGTT GTGG  GGA TC ATT CA AT   TGTTTT  TTGGGG     AAAGTATTTA TGTGGGT GGGG   ATTAAA AT TAAAG GTG   GTGGG    
TTAAAACTT             A    --   C  C   C  G  AAT      -G      AATAA          -       -    AAC      C  C     T   ATT     AAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End