Plant MITE

SE3550192

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6410
Mimulus guttatus
SE3550192
PIF/harbinger
To2
scaffold_5:3063400-3063620
TTA
TAGGCCTCGTTTGGTTG

Secondary structure and sequence

TSD TIR

5'

3'

T                 -----    A    --  CATTATTAACTAAATAATTGGACTTTGTTTGATGTCCCTAATAACTTGCCGGGTTGACCCGCAAATATTATGTTATCA
 TAGGCCTCGTTTGGTTG     GGGA ATTA  GC                                                                              
 |||||||||||||||||     |||| ||||  ||                                                                              T
 ATCCGGAGCAAATCAAC     TATT CTAA  TA                                                                              
A                 GGTTC    -    TT  TTAGATTACTTTGGGGTAACATAATAACCTGGAAACCTTCCAGGTTCTTTTTTTGTACGGATCTTCCGTTCTATTCCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550192

TTAGGCCTCGTTTGGTTGGGGAAATTAGCCATTATTAACTAAATAATTGGACTTTGTTTGATGTCCCTAATAACTTGCCGGGTTGACCCGCAAATATTATGTTATCATGCCTTATCTTGCCTTCTAGGCATGTTTTTTTCTTGGACCTTCCAAAGGTCCAATAATACAATGGGGTTTCATTAGATTATTTAATCTTATCTTGGCAACTAAACGAGGCCTAA

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