SE3520194

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6412
  • Mimulus guttatus
  • SE3520194
  • Mutator
  • M29
  • scaffold_10:13747463-13748074
  • TTAACTTAG
  • TAACTTAGGAGAAGTGCTATTTATACACTCAGAATATCTTATTTCACCACCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
T   C       AA   C     A   A   -   A       T    C       TTAA   TATTTCCTATTT        -------TTT      T         ACAA      --      GTCTATCA    A      --AAAA         AAAAAAAACCCCACCATTTT  C    AATCTCACCCTCTCCACCTTAACTGAATGATACTTTCGTCAGAGAAACACATTTCCGAAGGTCAAAAAAAGCAGAATTTCACGTTTTTTTAGAAATAAATTAAGAGTGCTTGTATGGAAGGTCTTGAACTTCCT
 TAA TTAGGAG  GTG TATTT TAC CTC AGA TATCTTA TTCA CACCAAA    ATA            TACCCTTT          TTCACC ATATTTTTT    ATTTAT  AAACCT        CTAA TTAATT      TTATTTTAT                    CG TGGA                                                                                                                                      
 ||| |||||||  ||| ||||| ||| ||| ||| ||||||| |||| |||||||    |||            ||||||||          |||||| |||||||||    ||||||  ||||||        |||| ||||||      |||||||||                    || ||||                                                                                                                                       
 ATT AATTCTC  CAC ATAAA GTG GAG TCT ATGGAGT AAGT GTGGTTT    TAT            ATGGGAAG          GGGTGG TGTAAAGGA    TAAGTG  TTTGGA        GATT AATTAA      AATAAAATA                    AT TAAA                                                                                                                                      
G   C       AC   A     G   -   G   C       T    T       CTAA   TCTACAGTATTT        TTTACATATT      -         -ATA      AA      --------    C      GATAAA         --------AAAAATTGAAAA  -    AAATTTAATAAAAAAATCAAAACGTTACTTTATAAATAATGTTCTATAAATTTGAAGGTACAGTCTACTGGATGTATAATGCATTAAAAAAACATCCTTTGCTTTAACATAATTCGGTTTGACCAGTCAATACC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End