Plant MITE

SE3520195

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6413
Mimulus guttatus
SE3520195
Mutator
M3
scaffold_4:18206000-18206259
ATTAAATAA
GGGTAAATTACACCAACACCCCTGAGGTATGCTTAAATAACTTTAAGGTCCCTGTAGTATCGATAATTACACTCACCTTCCTGAAACCAATAGTTCGTTAGAACTCTA

Secondary structure and sequence

TSD TIR

5'

3'

ATTAAATAA           A  A  A C                             C C   A                        C      CAA     C  TA        TCGTA    C    C
         GGGTAAATTAC CC AC C CCTGAGGTATGCTTAAATAACTTTAAGGT C TGT GTATCGATAATTACACTCACCTTC TGAAAC   TAGTT GT  GAACTCTA     ATAA GTAT 
         ||||||||||| || || | ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||   ||||| ||  ||||||||     |||| |||| C
         CCCATTTAATG GG TG G GGACTCCATACGAATTTATTGAAATTCCA G ACA CATGGCTATTAATGTGAGTGGGGG ACTTTG   ATCAA TA  TTTGAGAT     TATT CGTA 
AATAAATTA           C  G  C A                             A A   C                        A      --C     -  --        TATCC    A    A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520195

ATTAAATAAGGGTAAATTACACCAACACCCCTGAGGTATGCTTAAATAACTTTAAGGTCCCTGTAGTATCGATAATTACACTCACCTTCCTGAAACCAATAGTTCGTTAGAACTCTATCGTAATAACGTATCCAATGCATTATCCTATTAGAGTTTATAACTACGTTTCAAGGGGGTGAGTGTAATTATCGGTACCACAAGAACCTTAAAGTTATTTAAGCATACCTCAGGAGCGTGGGCGTAATTTACCCATTAAATAA

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