SE3520196

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6414
  • Mimulus guttatus
  • SE3520196
  • Mutator
  • M9
  • scaffold_10:4818417-4818740
  • TAAAACAAA
  • GAGAAAATTACTGTTTACATCCCTCAAGTTTGCACCGATTTCACATTTGGTCTCCATGTTCACAAAAAACACATTTGGTCATTCATGTTACATTAATTTAACATTTGTAGTCATTTACCGTTATTTCGCCAGTTAAGGCAGTGATGAGCA

Secondary structure and sequence

TSD    TIR
5'



3'
  TAAAACAAAC      A   CT    A     CTC         CC          T     -  C       C                 A        A  TT   T        G         A      -    G  A     G  AG     -  -  CAA
            GAGAAA TTA  GTTT CATCC   AAGTTTGCA  GATTTCACAT TGGTC TC ATGTTCA AAAAAACACATTTGGTC TTCATGTT CA  AAT TAACATTT TAGTCATTT CCGTTA TTTC CC GTTAA GC  TGATG AG CA   
            |||||| |||  |||| |||||   |||||||||  |||||||||| ||||| || ||||||| ||||||||||||||||| |||||||| ||  ||| |||||||| ||||||||| |||||| |||| || ||||| ||  ||||| || ||    
            CTTTTT AGT  TAAA GTAGG   TTCAAACGT  CTAAAGTGTA ATTAG AG TACAAGT TTTTTTGTGTAAACCAG GAGTATAA GT  TTA GTTGTAAA ATCAGTAAA GGCAGT AAAG GG CAATT TG  ATTAC TC GT   
CAAACAAAATCC      A   --    A     ACA         AA          T     G  T       A                 A        A  -T   T        A         -      T    -  -     A  --     A  A  TCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End