SE3520198

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6416
  • Mimulus guttatus
  • SE3520198
  • Mutator
  • M16
  • scaffold_8:18735571-18735781
  • ACATTAGTA
  • ATTAGTATGGTTCCTTCGACCCTACACCCGGTGAAAAACATCGGGTGAGTCTTCTGCTGCCACGTGTTCTTTTTTTTATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AC      A     CC                                 A                   -        T      ---TCTAAAA    TAAAAGTA
  ATTAGT TGGTT  TTCGACCCTACACCCGGTGAAAAACATCGGGTG GTCTTCTGCTGCCACGTGT TCTTTTTT TATTTT          CCCC        
  |||||| |||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||          ||||        A
  TGATTA ACTAA  AAGCTGGGATGTGGGCCACTTTTTGTGGCCCAC CAGAAGACGACGGTGCACA AGAAAAAA ATAAAA          GGGG        
TA      C     AC                                 C                   G        C      TATTATCTAA    CGATCCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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