SE3550199

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6417
  • Mimulus guttatus
  • SE3550199
  • PIF/harbinger
  • To3
  • scaffold_9:4694007-4694381
  • TTA
  • AGAGCAACTCCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                ACAA      C       TA  -   TACTCATTTGAACTTCTTATATATATTATTTTGATACCTCTTTAAAAGTTTTTTACTCCAACCATAAACATTAAATAGATTATCAAAAAGTTAAATATATGAATAATTATATTTTTAAATAACATGTGTCAACTCATGATAGGTTGA
  AGAGCAACTCCAATGG    GTATCA AATGGAA  TC AAA                                                                                                                                                   
  ||||||||||||||||    |||||| |||||||  || |||                                                                                                                                                    
  TCTCGTTGAGGTTACC    CCCTTA TTTACCT  CA AGT                                                                                                                                                   
AT                ----      G       --  T   TTACTATTTTGAAGGTAAAAGTAAGGGTTTTGAATTTTATAAGGTGAGGTTACCTCCGTATTTTAACTACCAATCAAACTATGAGTTATAGGACCTCCACGTTTTTACCTAGGGCTTTTCACTTCATAGTTTTAGCATTGGTGAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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