SE3520201

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6419
  • Mimulus guttatus
  • SE3520201
  • Mutator
  • M21
  • scaffold_2:15595147-15595589
  • ATGTTAAAA
  • AACTGAAATGTTAAATGTCGTTTCAATTTTACTAATGTCGTTTTGACTTCGAACCTGATTTTGACATATTTCTA

Secondary structure and sequence

TSD    TIR
5'



3'
ATGTTAA   -  AA    --            CAA     C      C   T           C         -   ----AT     TGTT       G            -CAC   AA       C    G      C   A       A   A    C      -        C T -   C   GT        AA    TCAC    TGAATTTTAGATACCTCAATA
       AAC TG  ATGT  TAAATGTCGTTT   TTTTA TAATGT GTT TGACTTCGAAC TGATTTTGA CAT      TTCTA    GATTTTG CAAAATTCGAAA    GAA  TTGTAGT TTTT GGTTAG TTT TAATCCA CTT AATC GCTAGA TTGGATGT G G TGA AAA  TATGCATG  TGAG    ATTT                     
       ||| ||  ||||  ||||||||||||   ||||| |||||| ||| ||||||||||| ||||||||| |||      |||||    ||||||| ||||||||||||    |||  ||||||| |||| |||||| ||| ||||||| ||| |||| |||||| |||||||| | | ||| |||  ||||||||  ||||    ||||                     C
       TTG AC  TACA  ATTTACAGCAAG   GAAAT ATTATG CAA GCTGAAGTTTG ACTAAAACT GTA      AAGGT    TTAAAAC GTTTTGAGCTTT    CTT  AACATCA AAGA TCAATC AAA ATTAGGT GAA TTAG TGGTTT AACCTACA C C GCT TTT  ATATGTAC  GTAG    TTAC                     
   AAAA   T  CC    CT            CTC     T      A   T           C         A   AAAATT     ----       -            TTAT   -A       T    A      A   G       G   C    -      T        A - T   C   AT        --    ----    CTATAACGGGTGTTGAAACTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End