SE3520203

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6421
  • Mimulus guttatus
  • SE3520203
  • Mutator
  • M9
  • scaffold_14:11843455-11843793
  • TTTTTTTTT
  • GGGGAAATTACAGTTTTTGTCCCTCAAGTTTGCACAAATTTCACATTTGGTCTTCCATGTTCACAAAGAAACACATTTGGTCCCTCATGTTCCAATAATTTAACATTTTTTGTCATTTCCGTCAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTTTTT       T                          CAA              C         C        AC           CTC     CC  T   --T          T                 AC   CA    GTTAGTTAAGACAGTTATGGAC
          GGGGAAA TACAGTTTTTGTCCCTCAAGTTTGCA   ATTTCACATTTGGT TTCCATGTT ACAAAGAA  ACATTTGGTCC   ATGTT  AA AAT   TAACATTTTT GTCATTTCCGTCAATTT  CGT  GTCC                      
          ||||||| ||||||||||||||||||||||||||   |||||||||||||| ||||||||| ||||||||  |||||||||||   |||||  || |||   |||||||||| |||||||||||||||||  |||  ||||                       
          CCCTTTT ATGTCAAAGACAGGGAGTTCAAACGT   TAAAGTGTAAATCA GGGGTACAA TGTTTTTT  TGTAAACTAGG   TACAA  TT TTA   GTTGTAAAAA CAGTAAAGGCAGTTAAA  GGG  CAAT                      
TTTTTTTTTT       T                          TGC              A         A        -A           TAA     AA  T   TGT          T                 --   --    TTTGATTGCCTTAGTTCGCACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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