SE3520204

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6422
  • Mimulus guttatus
  • SE3520204
  • Mutator
  • M3
  • scaffold_14:7171548-7171789
  • ATATTTATA
  • ATATTTATAGGGTAAATTACATCCACACCCCTGTAGTATGCTTAAATAATTTTAAGGTTCCTATGGTATCGATAATTACACTCATCCCCTGAAATGTAGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
    TT   A             ----           TA                           A                         C             GACACTCT    GGATAATT
 ATA  TAT GGGTAAATTACAT    CCACACCCCTG  GTATGCTTAAATAATTTTAAGGTTCCT TGGTATCGATAATTACACTCATCCC TGAAATGTAGTTA        AACG        
 |||  ||| |||||||||||||    |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||        ||||         
 TAT  ATA CCCATTTAATGTA    GGTGTGGGGAC  TATACGAATTTATTGAAATTCCAGGGA ACCATAGCTATTAATGTGAGTGGGG ACTTTGCATCAAT        TTGC        
A   TT   -             CGTG           TC                           C                         A             ------AT    ATCAACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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