SE3530207

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6425
  • Mimulus guttatus
  • SE3530207
  • hAT
  • Hat8
  • scaffold_12:19505343-19505976
  • ATAAATAG
  • CAGTGTTCTAAATATCGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAATAG   T                -   GCGGCCGATATATCGGCCGTCATATCGGTGGCGGGAACAAACCTTTACGATATTTGTGTGCGGTTTTGAAAATCGGTTTTTTGACGGTGAGGCGGTCCAAGGCGGTTTGTGGCGGTCTGTGGCGGGTCAAACCGATATATCGGGTCAAATTTCGAGCGATATATCGAAAAAATATTTTTTTTTTCTAATTTTTTTATTTATGTTTTATCACAATGAAAATAGGGTGTTTATCTTTATTTTTATTTTTTTTCAATTCCAACCCATTATCTCCTTCAATCAAACCGA
        CAG GTTCTAAATATCGGTT GTG                                                                                                                                                                                                                                                                                             
        ||| |||||||||||||||| |||                                                                                                                                                                                                                                                                                             A
        GTT CAAGATTTATAGTCAA AGC                                                                                                                                                                                                                                                                                             
GATAAATA   C                T   CCAAGCTCCGCCAATCCCTGGCGGTGTGCTATTTAGCCACACCGTCGCTAATTAGCCTCTATATAGCCTTTATTTAGCCAAAAATCTAAATCACATTATATAAAGATTTATAATAAAAAATTATGAAGTTTGCATATTTTTTTTAACTTGAACTAAGAGAGGAGTAGCAAATATATTAGATTAGTGTAATGTTTTCAAATTGTAAATCTTGAACTAAGAGAGGAGTAGCAATGCAAGATTTACAAAAATAAAAATCCCGTCCAAGAAGAATGCCCTAGCCACTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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