SE3520213

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6431
  • Mimulus guttatus
  • SE3520213
  • Mutator
  • M30
  • scaffold_8:19095357-19095905
  • TTTGAAATT
  • TTTGAAATTTGGCAAATTACGGCCACCCATAAGGTAAGGTCAAATTACGAAAATACCACTCA

Secondary structure and sequence

TSD    TIR
5'



3'
     G   TTT                  ATA       GT            AT   A    -CATAT          TTG      -- T  GTATTCTTACAGTGTCAAATTTACATAGAGGTGTTCATCTGGTTTATAAACTAAGGAACTGTACCGAACGAAAATTCGGTACATGTTTGTTACCGAACCGGTAATTCAGTATGATATTCCATTTTTTCATTATTTTATATATATAATTATATATGTAAAATATTAGTATTTAAACAAAAAAAATTC
  TTT AAA   GGCAAATTACGGCCACCC   AGGTAAG  CAAATTACGAAA  ACC CTCA      CAACTATGTA   TGATAC  T GT                                                                                                                                                                                          
  ||| |||   ||||||||||||||||||   |||||||  ||||||||||||  ||| ||||      ||||||||||   ||||||  | ||                                                                                                                                                                                          A
  AAA TTT   CCGTTTAATGCCGGTGGG   TTCATTC  GTTTAATGCTTT  TGG GGGT      GTTGGTGGTG   AATTGA  C GT                                                                                                                                                                                          
TT   G   --C                  GAC       GC            --   -    ATTAAT          ---      CA -  AATAAAATGCTTTTTTGGGGAGGTCCACCATTTTAATTCACAAAAAAAAATAGTTATTATTTTAATCCTCACAAGTAAGCCATTTTTTACATGACTTTAAAGTCATGCGGTTTTGAAGTATGGCAAATCGAAAGCCGAGCCATCTATTCGCTTGATATCTTTAAATTAATTTTTATAAATTTTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End