SE3520216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6434
  • Mimulus guttatus
  • SE3520216
  • Mutator
  • M2
  • scaffold_14:5359745-5360014
  • TTAAATTTA
  • TAAATTTAGGGCAAATTACGGACACCCCTTGAGGCAAAGTCAAATTACGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -             A      T     C  A    A         CCCCC      -C                       ----          ---        ----   T    CCTTGTGGCGTCAAA
 TAAATTTA GGGCAAATTACGG CACCCC TGAGG AA GTCA ATTACGAAA     CCTTCT  TTTGGGTAATTACAACCACCCCC    AACTATGTAT   TGTCTTAC    ACG CCAC               
 |||||||| ||||||||||||| |||||| ||||| || |||| |||||||||     ||||||  |||||||||||||||||||||||    ||||||||||   ||||||||    ||| ||||               T
 ATTTAAAT CCCGTTTAATGCC GTGGGG ACTCC TT CAGT TAATGCTTT     GGGAGA  AAACCCATTAATGTTGGTGGGGG    TTGATACATA   ACAGAATG    TTT GGGT               
         T             G      T     A  C    C         TTTGT      AC                       GGAG          ATA        CTTT   -    AGGAAGTCATCCATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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