SE3520217

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6435
  • Mimulus guttatus
  • SE3520217
  • Mutator
  • M5
  • scaffold_1:5422747-5423105
  • TATTTTTAA
  • AGGGTAAATTAAGAAAACCCCTGAACTTAGGCTAATAACGAAAAACACCTCACCTATTCGTAATTACCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTTA           A        -C              -       A        -  C          T          CCATGAGGTTTGTTTCCGTCTTACACCAATCCCCTTACATTGTGACTTTTTACGTAGTTTTTTTTTATTCCAGTGAATAGACTTTACACAATTTC
        AGGGTAAATTA GAAAACCC  TGAACTTAGGCTAA TAACGAA AACACCTC AC TATTCGTAAT ACCAAAAACC                                                                                               
        ||||||||||| ||||||||  |||||||||||||| ||||||| |||||||| || |||||||||| ||||||||||                                                                                                
        TCCCATTTAAT TTTTTGGG  ACTTGAATCCGATT ATTGCTT TTGTGGGG TG ATAGGCATTA TGGTTTTAGG                                                                                               
AATTTTTA           G        CT              T       A        G  T          T          GGAAGACTTATTGACAACCAACTCAAAAAATTGTCTTTTACACATGTCAGATAATATGGAATACAATTTACCCACTCTTTATTTTCTTTTATAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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