SE3520219

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6437
  • Mimulus guttatus
  • SE3520219
  • Mutator
  • M2
  • scaffold_12:8238213-8238567
  • TACTTTTTA
  • TAGGGCAAATTACAGCCACCCCTGAGGTATGGTCAAATTACGAAAAAAACCCCTCTTGCTTGGGTAATTACAGCCACCCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTTTT             A            G                   AAA         C                        TTTTTAAATATTT   CATAAAATTTATGTAATTCGGTTATTTATCGAACCAAATCGTATATTCAGTTCGGTAAACAGTATGAAATGTTGGC
       TAGGGCAAATTAC GCCACCCCTGAG TATGGTCAAATTACGAAAA   CCCCTCTTG TTGGGTAATTACAGCCACCCCCTC             TTA                                                                            
       ||||||||||||| |||||||||||| |||||||||||||||||||   ||||||||| ||||||||||||||||||||||||             |||                                                                             
       ATCCCGTTTAATG CGGTGGGGACTC ATACCAGTTTAATGCTTTT   GGGGAGGAC AACCCATTAATGTTGGTGGGGGAG             CAT                                                                            
ATTTTTC             C            A                   --G         A                        -------TTGATA   AATAGAATGCTTCTTTGGGGAGATATCCATTTAAATCCCTACAATATAGCCATTTTGGCTTGGTTTTAAAGCCATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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