Plant MITE

SE3520220

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6438
Mimulus guttatus
SE3520220
Mutator
M31
scaffold_9:12109462-12109814
TAAATTTTA
TAAATTTTAGGGTAAATTACGGTCACCCTTGAGGTATGGTCAAATTACGAAAAATTCATCTTGTTTAGGTAATTATAGCAACCCTCTC

Secondary structure and sequence

TSD TIR

5'

3'

    T                       -     G                   A   A  T     A           -  AC      -CTTTTAAATAT     -  T     TT     ATTCGGTTATTTACCAAACCAAATCGTATATTCAGTTCGGTAAACGGTATGAAATGT
TAAA TTTAGGGTAAATTACGGTCACCC TTGAG TATGGTCAAATTACGAAAA TTC TC TGTTT GGTAATTATAG CA  CCTCTC            TGTTA GA AAAAT  ATGTA                                                         
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| || ||||| ||||||||||| ||  ||||||            ||||| || |||||  |||||                                                         T
ATTT AAATCCCATTTAATGCCGGTGGG GATTC ATACCAGTTTAATGCTTTT GGG AG ACAAA CCATTAATGTC GT  GGAGAG            ACAAT CT TTTTG  GGGAT                                                         
    T                       T     A                   A   A  T     C           A  --      TTGATACATAAT     G  T     --     ATCTCCAATTAAATCCCTACAATTTAGCCATTTTGGCTTGGCTTTAAAGCCATGTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520220

TAAATTTTAGGGTAAATTACGGTCACCCTTGAGGTATGGTCAAATTACGAAAAATTCATCTTGTTTAGGTAATTATAGCAACCCTCTCCTTTTAAATATTGTTAGATAAAATTTATGTAATTCGGTTATTTACCAAACCAAATCGTATATTCAGTTCGGTAAACGGTATGAAATGTTTGTGTACCGAAATTTCGGTTCGGTTTTACCGATTTAACATCCCTAAATTAACCTCTATAGGGGTTTTTTCGTAACATAATACATAGTTGAGAGGTGACTGTAATTACCCAAACATGAAGGGATTTTCGTAATTTGACCATAACTTAGTGGGTGGCCGTAATTTACCCTAAATTTTA

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