SE3550221

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6439
  • Mimulus guttatus
  • SE3550221
  • PIF/harbinger
  • To10
  • scaffold_7:14328865-14329101
  • TAA
  • AGGGTGCATTTGGATGGAGGGATTTGGGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     G                        ----A       C        AATAA     -       A  TGTTTGGATTGAGGGATTTGGAGATGGATTTCAAATCCCCACCCCTCCTT
  AGGGT CATTTGGATGGAGGGATTTGGGGG     GGGATTT AAATCCAT     CAAAT CCCTCGA CT                                                  
  ||||| ||||||||||||||||||||||||     ||||||| ||||||||     ||||| ||||||| ||                                                  T
  TCCCA GTAAACCTACCTCCCTAAACCCCT     AACTAAA CCTCTTAC     CTAAA TTTACTG AG                                                  
AA     G                        CCCTA       -        -----     C       -  GTTAAAACCTCAGTAAACTTTAGGTAGTGATAACGAGGTTTTAGTTGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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