Plant MITE

SE3520227

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6445
Mimulus guttatus
SE3520227
Mutator
M2
scaffold_3:760246-760605
TAAAGAAAA
AGGGCAAATTACGGCCACCGACTGAGTTATGGTCAAATTACGAAAACCTCCCTCCTGTTTGGGTAATTAAAGCCACCCC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAGAAA                   -GA     T                   CCT C   C              A         TCAACTAT    ------------ A  TTACGAAAATACCCCTCCAGAGGTAAATTTAGGGATGTTAAATCGGTAAAACCGAACCGAAATTTCGGTACGCCA
        AGGGCAAATTACGGCCACC   CTGAG TATGGTCAAATTACGAAAA   C CTC TGTTTGGGTAATTA AGCCACCCC        GTAT            T TC                                                                           
        |||||||||||||||||||   ||||| |||||||||||||||||||   | ||| |||||||||||||| |||||||||        ||||            | ||                                                                            
        TCCCGTTTAATGCCGGTGG   GACTC ATACCGGTTTAATGCTTTT   G GAG ACAAACCCATTAAT TCGGTGGGG        GAGG            A AT                                                                           
AAAATAAA                   GAG     C                   TTT C   A              G         --------    AAAATTTATAAG -  GTATTTTAAATACATTAAGCCAATAAATGGTTTGGTTTAGCATATAAGTCAAGACATTTATTACCATACTTTACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520227

TAAAGAAAAGGGCAAATTACGGCCACCGACTGAGTTATGGTCAAATTACGAAAACCTCCCTCCTGTTTGGGTAATTAAAGCCACCCCTCAACTATGTATTATCTTACGAAAATACCCCTCCAGAGGTAAATTTAGGGATGTTAAATCGGTAAAACCGAACCGAAATTTCGGTACGCCAGCATTTCATACCATTATTTACAGAACTGAATATACGATTTGGTTTGGTAAATAACCGAATTACATAAATTTTATGTAAGAATATTTAAAAGGAGGGGGTGGCTGTAATTACCCAAACAAGAGCGTTTTTTTCGTAATTTGGCCATACCTCAGGAGGGTGGCCGTAATTTGCCCTAAATAAAA

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