Plant MITE

SE3530228

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6446
Mimulus guttatus
SE3530228
hAT
Hat17
scaffold_13:837395-838183
GTTATTCC
CCAATGTTTTGAAAACCGGACCGG

Secondary structure and sequence

TSD TIR

5'

3'

GTTATTC               C        ---   TT      -- ACAATCAAC                   TTCAACCGGGGTCCGACCGGGTTTTTCTATTTTTTACTTTTTAATTTTTATTCATTTATATATAATTTTTATATACACAAAACTACTTACTCATGACCCATTTAAAATATACCAAAAATAACGCACCAAACAACAAATTAATAATTATATTTCATTTACCATGTATACTTTTATATATAATAAATTTTGTATTAATAGAGGTCAATTAAATAAATTACTCAAGAAATTACAATAAAACTTTTATGTAAATTACTAAGTATACCCTCAAACCCTAATTGTGTTTTGTGATGACCACTACATGCCGTCTTATTATCCTCCGCCTCCCA
       CCAATGTTTTGAAAA CGGACCGG   AGA  GAACCG  G         TGGGTCATGGTTGGACCGG                                                                                                                                                                                                                                                                                                                                      
       ||||||||||||||| ||||||||   |||  ||||||  |         |||||||||||||||||||                                                                                                                                                                                                                                                                                                                                      C
       GGTTACAAAACTTTT GCCTGGCC   CCG  GCCAAG  G         GCCAAGTTGGCGCTTGGCC                                                                                                                                                                                                                                                                                                                                      
CCTTATT               A        TGG   --      CT ---------                   ACGGACTAGGCCAGGCCAGCTTGTAGTTTTGGGTTTTTGCGGTTTTTTGGCCAGTTAGCGAAAACTTGGCAACTTTAGGGCCAACTTGGCCTATTTTGGCCGGGTCTTTTGGCCGGGTCTTTTGGCTCAAGCTACGTTGCTTTTACATATTCCTTTTTTTTTTCCTACCTCTAAGGCATCTTCTAATTATGTGAAATTATACCTATATCACCCCTCCTTAACTCTTACTTTCTTCTCTTTTAATCTTTCTTTTCTTCTTTTTTTTATTTTTTATATCTTTTTTGAATGTATTTGTGGCTGACTTCTTCTTCACCTTTCTTCTTATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530228

GTTATTCCCAATGTTTTGAAAACCGGACCGGAGATTGAACCGGACAATCAACTGGGTCATGGTTGGACCGGTTCAACCGGGGTCCGACCGGGTTTTTCTATTTTTTACTTTTTAATTTTTATTCATTTATATATAATTTTTATATACACAAAACTACTTACTCATGACCCATTTAAAATATACCAAAAATAACGCACCAAACAACAAATTAATAATTATATTTCATTTACCATGTATACTTTTATATATAATAAATTTTGTATTAATAGAGGTCAATTAAATAAATTACTCAAGAAATTACAATAAAACTTTTATGTAAATTACTAAGTATACCCTCAAACCCTAATTGTGTTTTGTGATGACCACTACATGCCGTCTTATTATCCTCCGCCTCCCACCTATTCTTCTTTCCACTTCTTCTTCAGTCGGTGTTTATGTAAGTTTTTTCTATATTTTTTATTTTTTTTCTTCTTTTCTTTCTAATTTTCTCTTCTTTCATTCTCAATTCCTCCCCACTATATCCATATTAAAGTGTATTAATCTTCTACGGAATCTCCATCCTTTTTTTTTTCCTTATACATTTTCGTTGCATCGAACTCGGTTTTCTGGGCCGGTTTTCTGGGCCGGTTTTATCCGGTTCAACCGGGATTTCAACGGTTCAAAAGCGATTGACCGGTTTTTTGGCGTTTTTGGGTTTTGATGTTCGACCGGACCGGATCAGGCACCGGTTCGCGGTTGAACCGGTCGAACCGGCCGGTCCGGTCCGATTTTCAAAACATTGGTTATTCC

Copy Cancel