SE3520229

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6447
  • Mimulus guttatus
  • SE3520229
  • Mutator
  • M9
  • scaffold_7:11425745-11426081
  • CAAGGAAAA
  • GGGAAATTTATAGTTTTCATCCCTCAAGTTTGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAGGAAAAT       T    G                     ACGA                         CA                      T    C  T    T             A             GCCGTTA       ATTTACATTAGTGATGGGCA
          GGGAAAT TATA TTTTCATCCCTCAAGTTTGTA    TTTCACATTTGGTTCCCCATGTTCA  AAAAAACACATTTGGTCCCTCG GTTT AA AATT GACACTTTTGGTC TTTCCGTCAATTT       GTCCATC                    
          ||||||| |||| |||||||||||||||||||||    |||||||||||||||||||||||||  |||||||||||||||||||||| |||| || |||| ||||||||||||| |||||||||||||       |||||||                    C
          CCCTTTG ATGT AAAAGTAGGGAGTTCAAACGT    AAAGTGTAAACCAGGGGGTACAAGT  TTTTTTGTGTAAACCAGGGAGT CAAA TT TTAA TTGTGAAAATCAG AAAGGCAGTTAAA       AGGTAGT                    
TAAAAGCAAC       T    G                     GACC                         -A                      C    T  T    T             G             -------       TTTGATTACCTTATTTTGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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