Plant MITE

SE3550230

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6448
Mimulus guttatus
SE3550230
PIF/harbinger
To2
scaffold_12:1037198-1037429
TAT
GGCCTCGTTTGGTTGGGGAGATTAGCCATGATTAACTGAAGTAATGGGACTTTGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

TAT               -----GG         -----CAT      C   AG           TGT   ATGT    TATCCCCAATAACTTGCCGGGTCGACCCGCAAATATTATGTTA
   GGCCTCGTTTGGTTG       GAGATTAGC        GATTAA TGA  TAATGGGACTT   TTG    TTGG                                           
   |||||||||||||||       |||||||||        |||||| |||  |||||||||||   |||    ||||                                            
   CCGGAGCAAACCAAC       TTCTAATCG        TTAATT ATT  ATTACTTTGGG   AAC    ATAA                                           
TAT               GGTTCTA         ATTCTATT      T   AG           -TT   -ATC    CCTGGAACCTTCTAGGTTATTTTTTGTACGGATTTTCTGTACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550230

TATGGCCTCGTTTGGTTGGGGAGATTAGCCATGATTAACTGAAGTAATGGGACTTTGTTTGATGTTTGGTATCCCCAATAACTTGCCGGGTCGACCCGCAAATATTATGTTATCATGTCTTTTAGGCATGTTTTTTATTGGATCTTCCAAGGTCCAATACTACAATTGGGTTTCATTAGATTATTTAATTTTATCTTAGCTAATCTTATCTTGGCAACCAAACGAGGCCTAT

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