SE3520231

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6449
  • Mimulus guttatus
  • SE3520231
  • Mutator
  • M9
  • scaffold_9:12431405-12431710
  • TATTATTAT
  • GGGGAAATTACAAGTTTCATCCCTCAAGTTTGCATTGATTTCACATTTGGTCCCTCATGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTATTATC       T    A    -CA       A T                                -----C   T    TAACACTTTTGGTCATTTCCGTCAATTTACCGTTAGTCCGTTAGTTAAGGTAGTCATGGAACATGCTTGAT
          GGGGAAA TACA GTTT   TCCCTCA G TTGCATTGATTTCACATTTGGTCCCTCATGTT      CAA AATT                                                                       
          ||||||| |||| ||||   ||||||| | ||||||||||||||||||||||||||||||||      ||| ||||                                                                        
          CCCTTTT ATGT CAAA   AGGGAGT C AACGTGGCTAAAGTGTAAACCAGGGGGTACAA      TTT GTGT                                                                       
CTATTATTAT       T    -    AAC       A T                                TTTTTT   -    AAACCAGGGAATACAAAGTTTTTAAGTTGTGAAAATTAGGAAAGGCAGTTAAAAGGCAATTGTGATTGCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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