SE3520233

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6451
  • Mimulus guttatus
  • SE3520233
  • Mutator
  • M8
  • scaffold_10:5965311-5965776
  • TATGTATAA
  • TGTATAAGGGTAAATTACAACCACCCCGTTAGGTATGGTCAAATTACAAAACCCCCTCTTGTTTGGGTAATTACAATCACCCCTCAACTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA      -                   -  GTT           AA    -    C                       A  -      C  C   -AAATC         G  A       C              TGG    T  G     ATA      ATTA  ACT       C      AAACCA    AACTCCATATTTTGAAGCAAGATGATCATACTATGTGTTTTTT
  TGTATA AGGGTAAATTACAACCACC CC   AGGTATGGTCA  TTAC AAAA CCCCTCTTGTTTGGGTAATTACA TC ACCCCT AA TAT      TTCTTATAC TC ATTCTTG GGTTTCAAATTTAG   AATC TC AGATT   TGGAAT    TC   TTTGTAC CGTTTT      TTCG                                           
  |||||| ||||||||||||||||||| ||   |||||||||||  |||| |||| ||||||||||||||||||||||| || |||||| || |||      ||||||||| || ||||||| ||||||||||||||   |||| || |||||   ||||||    ||   ||||||| ||||||      ||||                                           T
  ATATGT TCCCATTTAATGTTGGTGG GG   TCCATACCAGT  AATG TTTT GGGGAGAACAAACCTATTAATGT AG TGGGGA TT ATA      AAGAATGTG AG TGGGAAT CCAAAGTTTAAGTT   TTAG AG TCTAA   ACCTTA    AG   AAACATG GCAAAA      ACAT                                           
 A      A                   A  -AC           AA    C    T                       -  A      A  A   CTAAAA         G  G       A              GTA    T  A     AGC      CACG  ATC       A      -----C    TTTTATGTCAAAGACTACGTGGTGTTAGACTATATATGTTCGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End