Plant MITE

SE3530234

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6452
Mimulus guttatus
SE3530234
hAT
Hat9
scaffold_13:10074071-10074616
GAGGGAAC
CCAGGGCCGGTTCTGAGAGGAGGC

Secondary structure and sequence

TSD TIR

5'

3'

GAGGGAA         G        ----  A   GAAG      -  ------CGCCTA   ---   CCG      --- GTAAAAAATTAGGGCCCCCAATTTTTTTATACCCTTTATATATTAGTATTTATTAAAAAAAATTATGTTACGTTATATATATAATTATTGAGTTCCCTAATTCATAAATAGATAGTGATCAACGATTTTTACTTGTTTCTATAATTTCTCTGATTATGGGGCCCCCAATTAATAAATTTCTTGTGCATTAATTATTTATTTT
       CCAGGGCCG TTCTGAGA    GG GGC    TAGGCG GT            GGG   CCC   GATTTT   T                                                                                                                                                                                                          
       ||||||||| ||||||||    || |||    |||||| ||            |||   |||   ||||||   |                                                                                                                                                                                                           
       GGTCCCGGC AGGACTCT    CC CCG    ATCCGC CA            ACT   TAC   CCCGGG   A                                                                                                                                                                                                          
CAAGGGA         A        AAAA  C   --GG      T  AAACTTCTACCA   TTT   ---      AAG TCTTAGATGTAATTTTAAGTGAAAAAAGATTTTACTACTATTTGAGATACAATTGAGCAAAAACATTCCATATATTGGTCTCCGTTACAATATTTAAAAACTATATCACTACAATATCAAAAACCCCCAAGCCCCCGTCGCGGGGGCTAAAAAAAATTCCTATTAAAATTACTTCATCGTGATTTTGTTCACATTTATATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530234

GAGGGAACCAGGGCCGGTTCTGAGAGGAGGCGAAGTAGGCGGTCGCCTAGGGCCCCCGGATTTTTGTAAAAAATTAGGGCCCCCAATTTTTTTATACCCTTTATATATTAGTATTTATTAAAAAAAATTATGTTACGTTATATATATAATTATTGAGTTCCCTAATTCATAAATAGATAGTGATCAACGATTTTTACTTGTTTCTATAATTTCTCTGATTATGGGGCCCCCAATTAATAAATTTCTTGTGCATTAATTATTTATTTTTATATATTTACACTTGTTTTAGTGCTACTTCATTAAAATTATCCTTAAAAAAAATCGGGGGCGCTGCCCCCGAACCCCCAAAAACTATAACATCACTATATCAAAAATTTATAACATTGCCTCTGGTTATATACCTTACAAAAACGAGTTAACATAGAGTTTATCATCATTTTAGAAAAAAGTGAATTTTAATGTAGATTCTAGAAGGGCCCCATTTTTCAACCATCTTCAAAACTCGCCTAGGGCCCCCAAAATCTCAGGAACGGCCCTGGAGGGAAC

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