SE3520235

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6453
  • Mimulus guttatus
  • SE3520235
  • Mutator
  • M4
  • scaffold_2:16047949-16048462
  • ATAAATAAA
  • GGGTAAATTTCACTTTTCCCTCTTGTATTTTGATTCATTATCACTTTACC

Secondary structure and sequence

TSD    TIR
5'



3'
ATAAATAAA          CA    TC   C             CAT   CA       CCACG   C                       CCATACAC                 A    C C            G     CA   A  CTT          A  G    C         -       T  C       G        AC      T   T   CAAAAAT       AAAAAATTCAAGAC   GAGAA
         GGGTAAATTT  CTTT  CCT TTGTATTTTGATT   TAT  CTTTACC     TTA TCTTGATTGCATCGATTTGCTCC        TTGAAAAATTGTCTCAA GTGG C TTGCTGTTAGTT TCAGA  TTT AC   AACACCGTTT GT TAAG TCTGAAAAT ACAAAAA GC ACCCCTC CAGTTTAA  AATTAT AAA AAA       AAAAAAT              GAC     
         ||||||||||  ||||  ||| |||||||||||||   |||  |||||||     ||| |||||||||||||||||||||||        ||||||||||||||||| |||| | |||||||||||| |||||  ||| ||   |||||||||| || |||| ||||||||| ||||||| || ||||||| ||||||||  |||||| ||| |||       |||||||              |||     A
         CCCATTTAAG  GGAA  GGA AGCATGAAACTGA   ATA  GAAATGG     GAT AGAGCTAACGTAGCTAAACGGGG        AACTTTTTAACAGAGTT CACC G AGCGGCAATCAA AGTCT  AAA TG   TTGTGGCAAA TA ATTC AGACTTTTA TGTTTTT TG TGGGGAG GTCAAATT  TTAATA TTT TTT       TTTTTTA              CTG     
AAATATATA          AC    --   -             TAT   AC       -AAAA   A                       -AAAAATA                 A    A T            A     AG   C  CAT          C  G    -         A       -  T       G        AA      C   T   TACATTT       -CCGACAGCAGCAC   ATACG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End